Source code for sas.qtgui.Perspectives.Inversion.InversionPerspective

import logging
import numpy as np

from PyQt5 import QtGui, QtCore, QtWidgets

# sas-global
import sas.qtgui.Utilities.GuiUtils as GuiUtils

# pr inversion GUI elements
from .InversionUtils import WIDGETS
from .UI.TabbedInversionUI import Ui_PrInversion
from .InversionLogic import InversionLogic

# pr inversion calculation elements
from sas.sascalc.pr.invertor import Invertor
from sas.qtgui.Plotting.PlotterData import Data1D
# Batch calculation display
from sas.qtgui.Utilities.GridPanel import BatchInversionOutputPanel


[docs]def is_float(value): """Converts text input values to floats. Empty strings throw ValueError""" try: return float(value) except ValueError: return 0.0
NUMBER_OF_TERMS = 10 REGULARIZATION = 0.0001 BACKGROUND_INPUT = 0.0 MAX_DIST = 140.0 DICT_KEYS = ["Calculator", "PrPlot", "DataPlot"] logger = logging.getLogger(__name__)
[docs]class InversionWindow(QtWidgets.QDialog, Ui_PrInversion): """ The main window for the P(r) Inversion perspective. """ name = "Inversion" estimateSignal = QtCore.pyqtSignal(tuple) estimateNTSignal = QtCore.pyqtSignal(tuple) estimateDynamicNTSignal = QtCore.pyqtSignal(tuple) estimateDynamicSignal = QtCore.pyqtSignal(tuple) calculateSignal = QtCore.pyqtSignal(tuple) def __init__(self, parent=None, data=None): super(InversionWindow, self).__init__() self.setupUi(self) self.setWindowTitle("P(r) Inversion Perspective") self._manager = parent #Needed for Batch fitting self._parent = parent self.communicate = parent.communicator() self.communicate.dataDeletedSignal.connect(self.removeData) self.logic = InversionLogic() # The window should not close self._allowClose = False # Visible data items # current QStandardItem showing on the panel self._data = None # Reference to Dmax window for self._data self.dmaxWindow = None # p(r) calculator for self._data self._calculator = Invertor() # Default to background estimate self._calculator.est_bck = True # plots of self._data self.prPlot = None self.dataPlot = None # suggested nTerms self.nTermsSuggested = NUMBER_OF_TERMS # Calculation threads used by all data items self.calcThread = None self.estimationThread = None self.estimationThreadNT = None self.isCalculating = False # Mapping for all data items # Dictionary mapping data to all parameters self._dataList = {} if not isinstance(data, list): data_list = [data] if data is not None: for datum in data_list: self.updateDataList(datum) self.dataDeleted = False self.model = QtGui.QStandardItemModel(self) self.mapper = QtWidgets.QDataWidgetMapper(self) # Batch fitting parameters self.isBatch = False self.batchResultsWindow = None self.batchResults = {} self.batchComplete = [] # Add validators self.setupValidators() # Link user interactions with methods self.setupLinks() # Set values self.setupModel() # Set up the Widget Map self.setupMapper() #Hidding calculate all buton self.calculateAllButton.setVisible(False) # Set base window state self.setupWindow() ###################################################################### # Base Perspective Class Definitions
[docs] def communicator(self): return self.communicate
[docs] def allowBatch(self): return False
[docs] def setClosable(self, value=True): """ Allow outsiders close this widget """ assert isinstance(value, bool) self._allowClose = value
[docs] def isClosable(self): """ Allow outsiders close this widget """ return self._allowClose
[docs] def closeEvent(self, event): """ Overwrite QDialog close method to allow for custom widget close """ # Close report widgets before closing/minimizing main widget self.closeDMax() self.closeBatchResults() if self._allowClose: # reset the closability flag self.setClosable(value=False) # Tell the MdiArea to close the container self.parentWidget().close() event.accept() else: event.ignore() # Maybe we should just minimize self.setWindowState(QtCore.Qt.WindowMinimized)
[docs] def closeDMax(self): if self.dmaxWindow is not None: self.dmaxWindow.close()
[docs] def closeBatchResults(self): if self.batchResultsWindow is not None: self.batchResultsWindow.close()
###################################################################### # Initialization routines
[docs] def setupMapper(self): # Set up the mapper. self.mapper.setOrientation(QtCore.Qt.Vertical) self.mapper.setModel(self.model) # Filename self.mapper.addMapping(self.dataList, WIDGETS.W_FILENAME) # Background self.mapper.addMapping(self.backgroundInput, WIDGETS.W_BACKGROUND_INPUT) self.mapper.addMapping(self.estimateBgd, WIDGETS.W_ESTIMATE) self.mapper.addMapping(self.manualBgd, WIDGETS.W_MANUAL_INPUT) # Qmin/Qmax self.mapper.addMapping(self.minQInput, WIDGETS.W_QMIN) self.mapper.addMapping(self.maxQInput, WIDGETS.W_QMAX) # Slit Parameter items self.mapper.addMapping(self.slitWidthInput, WIDGETS.W_SLIT_WIDTH) self.mapper.addMapping(self.slitHeightInput, WIDGETS.W_SLIT_HEIGHT) # Parameter Items self.mapper.addMapping(self.regularizationConstantInput, WIDGETS.W_REGULARIZATION) self.mapper.addMapping(self.regConstantSuggestionButton, WIDGETS.W_REGULARIZATION_SUGGEST) self.mapper.addMapping(self.explorerButton, WIDGETS.W_EXPLORE) self.mapper.addMapping(self.maxDistanceInput, WIDGETS.W_MAX_DIST) self.mapper.addMapping(self.noOfTermsInput, WIDGETS.W_NO_TERMS) self.mapper.addMapping(self.noOfTermsSuggestionButton, WIDGETS.W_NO_TERMS_SUGGEST) # Output self.mapper.addMapping(self.rgValue, WIDGETS.W_RG) self.mapper.addMapping(self.iQ0Value, WIDGETS.W_I_ZERO) self.mapper.addMapping(self.backgroundValue, WIDGETS.W_BACKGROUND_OUTPUT) self.mapper.addMapping(self.computationTimeValue, WIDGETS.W_COMP_TIME) self.mapper.addMapping(self.chiDofValue, WIDGETS.W_CHI_SQUARED) self.mapper.addMapping(self.oscillationValue, WIDGETS.W_OSCILLATION) self.mapper.addMapping(self.posFractionValue, WIDGETS.W_POS_FRACTION) self.mapper.addMapping(self.sigmaPosFractionValue, WIDGETS.W_SIGMA_POS_FRACTION) # Main Buttons self.mapper.addMapping(self.removeButton, WIDGETS.W_REMOVE) self.mapper.addMapping(self.calculateAllButton, WIDGETS.W_CALCULATE_ALL) self.mapper.addMapping(self.calculateThisButton, WIDGETS.W_CALCULATE_VISIBLE) self.mapper.addMapping(self.helpButton, WIDGETS.W_HELP) self.mapper.toFirst()
[docs] def setupModel(self): """ Update boxes with initial values """ bgd_item = QtGui.QStandardItem(str(BACKGROUND_INPUT)) self.model.setItem(WIDGETS.W_BACKGROUND_INPUT, bgd_item) blank_item = QtGui.QStandardItem("") self.model.setItem(WIDGETS.W_QMIN, blank_item) blank_item = QtGui.QStandardItem("") self.model.setItem(WIDGETS.W_QMAX, blank_item) blank_item = QtGui.QStandardItem("") self.model.setItem(WIDGETS.W_SLIT_WIDTH, blank_item) blank_item = QtGui.QStandardItem("") self.model.setItem(WIDGETS.W_SLIT_HEIGHT, blank_item) no_terms_item = QtGui.QStandardItem(str(NUMBER_OF_TERMS)) self.model.setItem(WIDGETS.W_NO_TERMS, no_terms_item) reg_item = QtGui.QStandardItem(str(REGULARIZATION)) self.model.setItem(WIDGETS.W_REGULARIZATION, reg_item) max_dist_item = QtGui.QStandardItem(str(MAX_DIST)) self.model.setItem(WIDGETS.W_MAX_DIST, max_dist_item) blank_item = QtGui.QStandardItem("") self.model.setItem(WIDGETS.W_RG, blank_item) blank_item = QtGui.QStandardItem("") self.model.setItem(WIDGETS.W_I_ZERO, blank_item) bgd_item = QtGui.QStandardItem(str(BACKGROUND_INPUT)) self.model.setItem(WIDGETS.W_BACKGROUND_OUTPUT, bgd_item) blank_item = QtGui.QStandardItem("") self.model.setItem(WIDGETS.W_COMP_TIME, blank_item) blank_item = QtGui.QStandardItem("") self.model.setItem(WIDGETS.W_CHI_SQUARED, blank_item) blank_item = QtGui.QStandardItem("") self.model.setItem(WIDGETS.W_OSCILLATION, blank_item) blank_item = QtGui.QStandardItem("") self.model.setItem(WIDGETS.W_POS_FRACTION, blank_item) blank_item = QtGui.QStandardItem("") self.model.setItem(WIDGETS.W_SIGMA_POS_FRACTION, blank_item)
[docs] def setupWindow(self): """Initialize base window state on init""" self.enableButtons() self.estimateBgd.setChecked(True)
[docs] def setupValidators(self): """Apply validators to editable line edits""" self.noOfTermsInput.setValidator(QtGui.QIntValidator()) self.regularizationConstantInput.setValidator(GuiUtils.DoubleValidator()) self.maxDistanceInput.setValidator(GuiUtils.DoubleValidator()) self.minQInput.setValidator(GuiUtils.DoubleValidator()) self.maxQInput.setValidator(GuiUtils.DoubleValidator()) self.slitHeightInput.setValidator(GuiUtils.DoubleValidator()) self.slitWidthInput.setValidator(GuiUtils.DoubleValidator())
###################################################################### # Methods for updating GUI
[docs] def enableButtons(self): """ Enable buttons when data is present, else disable them """ self.calculateAllButton.setEnabled(len(self._dataList) > 1 and not self.isBatch and not self.isCalculating) self.calculateThisButton.setEnabled(self.logic.data_is_loaded and not self.isBatch and not self.isCalculating) self.removeButton.setEnabled(self.logic.data_is_loaded) self.explorerButton.setEnabled(self.logic.data_is_loaded) self.stopButton.setVisible(self.isCalculating) self.regConstantSuggestionButton.setEnabled( self.logic.data_is_loaded and self._calculator.suggested_alpha != self._calculator.alpha) self.noOfTermsSuggestionButton.setEnabled( self.logic.data_is_loaded and self._calculator.nfunc != self.nTermsSuggested)
[docs] def populateDataComboBox(self, filename, data_ref): """ Append a new file name to the data combobox :param filename: data filename :param data_ref: QStandardItem reference for data set to be added """ self.dataList.addItem(filename, data_ref)
[docs] def acceptNoTerms(self): """Send estimated no of terms to input""" self.model.setItem(WIDGETS.W_NO_TERMS, QtGui.QStandardItem( self.noOfTermsSuggestionButton.text()))
[docs] def acceptAlpha(self): """Send estimated alpha to input""" self.model.setItem(WIDGETS.W_REGULARIZATION, QtGui.QStandardItem( self.regConstantSuggestionButton.text()))
[docs] def displayChange(self, data_index=0): """Switch to another item in the data list""" if self.dataDeleted: return self.updateDataList(self._data) self.setCurrentData(self.dataList.itemData(data_index))
###################################################################### # GUI Interaction Events
[docs] def updateCalculator(self): """Update all p(r) params""" self._calculator.set_x(self.logic.data.x) self._calculator.set_y(self.logic.data.y) self._calculator.set_err(self.logic.data.dy) self.set_background(self.backgroundInput.text())
[docs] def set_background(self, value): self._calculator.background = is_float(value)
[docs] def model_changed(self): """Update the values when user makes changes""" if not self.mapper: msg = "Unable to update P{r}. The connection between the main GUI " msg += "and P(r) was severed. Attempting to restart P(r)." logger.warning(msg) self.setClosable(True) self.close() InversionWindow.__init__(self.parent(), list(self._dataList.keys())) exit(0) if self.dmaxWindow is not None: self.dmaxWindow.nfunc = self.getNFunc() self.dmaxWindow.pr_state = self._calculator self.mapper.toLast()
[docs] def help(self): """ Open the P(r) Inversion help browser """ tree_location = "/user/qtgui/Perspectives/Inversion/pr_help.html" # Actual file anchor will depend on the combo box index # Note that we can be clusmy here, since bad current_fitter_id # will just make the page displayed from the top self._manager.showHelp(tree_location)
[docs] def toggleBgd(self): """ Toggle the background between manual and estimated """ if self.estimateBgd.isChecked(): self.manualBgd.setChecked(False) self.backgroundInput.setEnabled(False) self._calculator.set_est_bck = True elif self.manualBgd.isChecked(): self.estimateBgd.setChecked(False) self.backgroundInput.setEnabled(True) self._calculator.set_est_bck = False else: pass
[docs] def openExplorerWindow(self): """ Open the Explorer window to see correlations between params and results """ from .DMaxExplorerWidget import DmaxWindow self.dmaxWindow = DmaxWindow(pr_state=self._calculator, nfunc=self.getNFunc(), parent=self) self.dmaxWindow.show()
[docs] def showBatchOutput(self): """ Display the batch output in tabular form :param output_data: Dictionary mapping filename -> P(r) instance """ if self.batchResultsWindow is None: self.batchResultsWindow = BatchInversionOutputPanel( parent=self, output_data=self.batchResults) else: self.batchResultsWindow.setupTable(self.batchResults) self.batchResultsWindow.show()
[docs] def stopCalculation(self): """ Stop all threads, return to the base state and update GUI """ self.stopCalcThread() self.stopEstimationThread() self.stopEstimateNTThread() # Show any batch calculations that successfully completed if self.isBatch and self.batchResultsWindow is not None: self.showBatchOutput() self.isBatch = False self.isCalculating = False self.updateGuiValues()
###################################################################### # Response Actions
[docs] def setData(self, data_item=None, is_batch=False): """ Assign new data set(s) to the P(r) perspective Obtain a QStandardItem object and parse it to get Data1D/2D Pass it over to the calculator """ assert data_item is not None if not isinstance(data_item, list): msg = "Incorrect type passed to the P(r) Perspective" raise AttributeError(msg) for data in data_item: if data in self._dataList.keys(): # Don't add data if it's already in continue # Create initial internal mappings self.logic.data = GuiUtils.dataFromItem(data) if not isinstance(self.logic.data, Data1D): msg = "P(r) perspective cannot be computed with 2D data." logger.error(msg) raise ValueError(msg) # Estimate q range qmin, qmax = self.logic.computeDataRange() self._calculator.set_qmin(qmin) self._calculator.set_qmax(qmax) if np.size(self.logic.data.dy) == 0 or np.all(self.logic.data.dy) == 0: self.logic.add_errors() self.updateDataList(data) self.populateDataComboBox(self.logic.data.filename, data) self.dataList.setCurrentIndex(len(self.dataList) - 1) #Checking for 1D again to mitigate the case when 2D data is last on the data list if isinstance(self.logic.data, Data1D): self.setCurrentData(data)
[docs] def updateDataList(self, dataRef): """Save the current data state of the window into self._data_list""" if dataRef is None: return self._dataList[dataRef] = { DICT_KEYS[0]: self._calculator, DICT_KEYS[1]: self.prPlot, DICT_KEYS[2]: self.dataPlot } # Update batch results window when finished self.batchResults[self.logic.data.filename] = self._calculator if self.batchResultsWindow is not None: self.showBatchOutput()
[docs] def getNFunc(self): """Get the n_func value from the GUI object""" try: nfunc = int(self.noOfTermsInput.text()) except ValueError: logger.error("Incorrect number of terms specified: %s" %self.noOfTermsInput.text()) self.noOfTermsInput.setText(str(NUMBER_OF_TERMS)) nfunc = NUMBER_OF_TERMS return nfunc
[docs] def setCurrentData(self, data_ref): """Get the data by reference and display as necessary""" if data_ref is None: return if not isinstance(data_ref, QtGui.QStandardItem): msg = "Incorrect type passed to the P(r) Perspective" raise AttributeError(msg) # Data references self._data = data_ref self.logic.data = GuiUtils.dataFromItem(data_ref) self._calculator = self._dataList[data_ref].get(DICT_KEYS[0]) self.prPlot = self._dataList[data_ref].get(DICT_KEYS[1]) self.dataPlot = self._dataList[data_ref].get(DICT_KEYS[2]) self.performEstimate()
[docs] def updateDynamicGuiValues(self): pr = self._calculator alpha = self._calculator.suggested_alpha self.model.setItem(WIDGETS.W_MAX_DIST, QtGui.QStandardItem("{:.4g}".format(pr.get_dmax()))) self.regConstantSuggestionButton.setText("{:-3.2g}".format(alpha)) self.noOfTermsSuggestionButton.setText( "{:n}".format(self.nTermsSuggested)) self.enableButtons()
[docs] def updateGuiValues(self): pr = self._calculator out = self._calculator.out cov = self._calculator.cov elapsed = self._calculator.elapsed alpha = self._calculator.suggested_alpha self.model.setItem(WIDGETS.W_QMIN, QtGui.QStandardItem("{:.4g}".format(pr.get_qmin()))) self.model.setItem(WIDGETS.W_QMAX, QtGui.QStandardItem("{:.4g}".format(pr.get_qmax()))) self.model.setItem(WIDGETS.W_BACKGROUND_INPUT, QtGui.QStandardItem("{:.3g}".format(pr.background))) self.model.setItem(WIDGETS.W_BACKGROUND_OUTPUT, QtGui.QStandardItem("{:.3g}".format(pr.background))) self.model.setItem(WIDGETS.W_COMP_TIME, QtGui.QStandardItem("{:.4g}".format(elapsed))) self.model.setItem(WIDGETS.W_MAX_DIST, QtGui.QStandardItem("{:.4g}".format(pr.get_dmax()))) if isinstance(pr.chi2, np.ndarray): self.model.setItem(WIDGETS.W_CHI_SQUARED, QtGui.QStandardItem("{:.3g}".format(pr.chi2[0]))) if out is not None: self.model.setItem(WIDGETS.W_RG, QtGui.QStandardItem("{:.3g}".format(pr.rg(out)))) self.model.setItem(WIDGETS.W_I_ZERO, QtGui.QStandardItem( "{:.3g}".format(pr.iq0(out)))) self.model.setItem(WIDGETS.W_OSCILLATION, QtGui.QStandardItem( "{:.3g}".format(pr.oscillations(out)))) self.model.setItem(WIDGETS.W_POS_FRACTION, QtGui.QStandardItem( "{:.3g}".format(pr.get_positive(out)))) if cov is not None: self.model.setItem(WIDGETS.W_SIGMA_POS_FRACTION, QtGui.QStandardItem( "{:.3g}".format( pr.get_pos_err(out, cov)))) if self.prPlot is not None: title = self.prPlot.name self.prPlot.plot_role = Data1D.ROLE_RESIDUAL GuiUtils.updateModelItemWithPlot(self._data, self.prPlot, title) self.communicate.plotRequestedSignal.emit([self._data,self.prPlot], None) if self.dataPlot is not None: title = self.dataPlot.name self.dataPlot.plot_role = Data1D.ROLE_DEFAULT self.dataPlot.symbol = "Line" self.dataPlot.show_errors = False GuiUtils.updateModelItemWithPlot(self._data, self.dataPlot, title) self.communicate.plotRequestedSignal.emit([self._data,self.dataPlot], None) self.enableButtons()
[docs] def removeData(self, data_list=None): """Remove the existing data reference from the P(r) Persepective""" self.dataDeleted = True self.batchResults = {} if not data_list: data_list = [self._data] self.closeDMax() for data in data_list: self._dataList.pop(data) self._data = None length = len(self.dataList) for index in reversed(range(length)): if self.dataList.itemData(index) in data_list: self.dataList.removeItem(index) # Last file removed self.dataDeleted = False if len(self._dataList) == 0: self.prPlot = None self.dataPlot = None self.logic.data = None self._calculator = Invertor() self.closeBatchResults() self.nTermsSuggested = NUMBER_OF_TERMS self.noOfTermsSuggestionButton.setText("{:n}".format( self.nTermsSuggested)) self.regConstantSuggestionButton.setText("{:-3.2g}".format( REGULARIZATION)) self.updateGuiValues() self.setupModel() else: self.dataList.setCurrentIndex(0) self.updateGuiValues()
###################################################################### # Thread Creators
[docs] def startThreadAll(self): self.isCalculating = True self.isBatch = True self.batchComplete = [] self.calculateAllButton.setText("Calculating...") self.enableButtons() self.batchResultsWindow = BatchInversionOutputPanel( parent=self, output_data=self.batchResults) self.performEstimate()
[docs] def startNextBatchItem(self): self.isBatch = False for index in range(len(self._dataList)): if index not in self.batchComplete: self.dataList.setCurrentIndex(index) self.isBatch = True # Add the index before calculating in case calculation fails self.batchComplete.append(index) break if self.isBatch: self.performEstimate() else: # If no data sets left, end batch calculation self.isCalculating = False self.batchComplete = [] self.calculateAllButton.setText("Calculate All") self.showBatchOutput() self.enableButtons()
[docs] def startThread(self): """ Start a calculation thread """ from .Thread import CalcPr # Set data before running the calculations self.isCalculating = True self.enableButtons() self.updateCalculator() # Disable calculation buttons to prevent thread interference # If the thread is already started, stop it self.stopCalcThread() pr = self._calculator.clone() #Making sure that nfunc and alpha parameters are correctly initialized pr.suggested_alpha = self._calculator.alpha self.calcThread = CalcPr(pr, self.nTermsSuggested, error_func=self._threadError, completefn=self._calculateCompleted, updatefn=None) self.calcThread.queue() self.calcThread.ready(2.5)
[docs] def stopCalcThread(self): """ Stops a thread if it exists and is running """ if self.calcThread is not None and self.calcThread.isrunning(): self.calcThread.stop()
[docs] def performEstimateNT(self): """ Perform parameter estimation """ from .Thread import EstimateNT self.updateCalculator() # If a thread is already started, stop it self.stopEstimateNTThread() pr = self._calculator.clone() # Skip the slit settings for the estimation # It slows down the application and it doesn't change the estimates pr.slit_height = 0.0 pr.slit_width = 0.0 nfunc = self.getNFunc() self.estimationThreadNT = EstimateNT(pr, nfunc, error_func=self._threadError, completefn=self._estimateNTCompleted, updatefn=None) self.estimationThreadNT.queue() self.estimationThreadNT.ready(2.5)
[docs] def performEstimateDynamicNT(self): """ Perform parameter estimation """ from .Thread import EstimateNT self.updateCalculator() # If a thread is already started, stop it self.stopEstimateNTThread() pr = self._calculator.clone() # Skip the slit settings for the estimation # It slows down the application and it doesn't change the estimates pr.slit_height = 0.0 pr.slit_width = 0.0 nfunc = self.getNFunc() self.estimationThreadNT = EstimateNT(pr, nfunc, error_func=self._threadError, completefn=self._estimateDynamicNTCompleted, updatefn=None) self.estimationThreadNT.queue() self.estimationThreadNT.ready(2.5)
[docs] def stopEstimateNTThread(self): if (self.estimationThreadNT is not None and self.estimationThreadNT.isrunning()): self.estimationThreadNT.stop()
[docs] def performEstimate(self): """ Perform parameter estimation """ from .Thread import EstimatePr # If a thread is already started, stop it self.stopEstimationThread() self.estimationThread = EstimatePr(self._calculator.clone(), self.getNFunc(), error_func=self._threadError, completefn=self._estimateCompleted, updatefn=None) self.estimationThread.queue() self.estimationThread.ready(2.5)
[docs] def performEstimateDynamic(self): """ Perform parameter estimation """ from .Thread import EstimatePr # If a thread is already started, stop it self.stopEstimationThread() self.estimationThread = EstimatePr(self._calculator.clone(), self.getNFunc(), error_func=self._threadError, completefn=self._estimateDynamicCompleted, updatefn=None) self.estimationThread.queue() self.estimationThread.ready(2.5)
[docs] def stopEstimationThread(self): """ Stop the estimation thread if it exists and is running """ if (self.estimationThread is not None and self.estimationThread.isrunning()): self.estimationThread.stop()
###################################################################### # Thread Complete def _estimateCompleted(self, alpha, message, elapsed): ''' Send a signal to the main thread for model update''' self.estimateSignal.emit((alpha, message, elapsed)) def _estimateDynamicCompleted(self, alpha, message, elapsed): ''' Send a signal to the main thread for model update''' self.estimateDynamicSignal.emit((alpha, message, elapsed)) def _estimateUpdate(self, output_tuple): """ Parameter estimation completed, display the results to the user :param alpha: estimated best alpha :param elapsed: computation time """ alpha, message, elapsed = output_tuple self._calculator.alpha = alpha self._calculator.elapsed += self._calculator.elapsed if message: logger.info(message) self.performEstimateNT() self.performEstimateDynamicNT() def _estimateDynamicUpdate(self, output_tuple): """ Parameter estimation completed, display the results to the user :param alpha: estimated best alpha :param elapsed: computation time """ alpha, message, elapsed = output_tuple self._calculator.alpha = alpha self._calculator.elapsed += self._calculator.elapsed if message: logger.info(message) self.performEstimateDynamicNT() def _estimateNTCompleted(self, nterms, alpha, message, elapsed): ''' Send a signal to the main thread for model update''' self.estimateNTSignal.emit((nterms, alpha, message, elapsed)) def _estimateDynamicNTCompleted(self, nterms, alpha, message, elapsed): ''' Send a signal to the main thread for model update''' self.estimateDynamicNTSignal.emit((nterms, alpha, message, elapsed)) def _estimateNTUpdate(self, output_tuple): """ Parameter estimation completed, display the results to the user :param alpha: estimated best alpha :param nterms: estimated number of terms :param elapsed: computation time """ nterms, alpha, message, elapsed = output_tuple self._calculator.elapsed += elapsed self._calculator.suggested_alpha = alpha self.nTermsSuggested = nterms # Save useful info self.updateGuiValues() if message: logger.info(message) if self.isBatch: self.acceptAlpha() self.acceptNoTerms() self.startThread() def _estimateDynamicNTUpdate(self, output_tuple): """ Parameter estimation completed, display the results to the user :param alpha: estimated best alpha :param nterms: estimated number of terms :param elapsed: computation time """ nterms, alpha, message, elapsed = output_tuple self._calculator.elapsed += elapsed self._calculator.suggested_alpha = alpha self.nTermsSuggested = nterms # Save useful info self.updateDynamicGuiValues() if message: logger.info(message) if self.isBatch: self.acceptAlpha() self.acceptNoTerms() self.startThread() def _calculateCompleted(self, out, cov, pr, elapsed): ''' Send a signal to the main thread for model update''' self.calculateSignal.emit((out, cov, pr, elapsed)) def _calculateUpdate(self, output_tuple): """ Method called with the results when the inversion is done :param out: output coefficient for the base functions :param cov: covariance matrix :param pr: Invertor instance :param elapsed: time spent computing """ out, cov, pr, elapsed = output_tuple # Save useful info cov = np.ascontiguousarray(cov) pr.cov = cov pr.out = out pr.elapsed = elapsed # Save Pr invertor self._calculator = pr # Update P(r) and fit plots self.prPlot = self.logic.newPRPlot(out, self._calculator, cov) self.prPlot.filename = self.logic.data.filename self.dataPlot = self.logic.new1DPlot(out, self._calculator) self.dataPlot.filename = self.logic.data.filename # Udpate internals and GUI self.updateDataList(self._data) if self.isBatch: self.batchComplete.append(self.dataList.currentIndex()) self.startNextBatchItem() else: self.isCalculating = False self.updateGuiValues() def _threadError(self, error): """ Call-back method for calculation errors """ logger.error(error) if self.isBatch: self.startNextBatchItem() else: self.stopCalculation()